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BF: Missing subdataset data retrieval #14

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adswa merged 2 commits from bf-data into master 2020-05-24 07:53:20 +00:00
Conversation 6 Commits 2 Files changed 1 +3 -3
1 changed files with 3 additions and 3 deletions
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6
code/mk_figuresnstats.py
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@ -7,6 +7,7 @@ import pylab as pl
import seaborn as sns import seaborn as sns
from remodnav import EyegazeClassifier from remodnav import EyegazeClassifier
from glob import glob from glob import glob
import datalad.api as dl
#from remodnav.tests.test_labeled import load_data as load_anderson #from remodnav.tests.test_labeled import load_data as load_anderson
@ -440,7 +441,6 @@ def quality_stats():
list of command invocations if the script is ran from the command line at the list of command invocations if the script is ran from the command line at the
end of the script. end of the script.
""" """
import datalad.api as dl
import matplotlib.pyplot as plt import matplotlib.pyplot as plt
datapath_mri = op.join('data', 'raw_eyegaze', 'sub-*', 'ses-movie', 'func', datapath_mri = op.join('data', 'raw_eyegaze', 'sub-*', 'ses-movie', 'func',
@ -615,6 +615,7 @@ def plot_raw_vel_trace():
""" """
import matplotlib.pyplot as plt import matplotlib.pyplot as plt
# use the same data as in savegaze() (no need for file retrieval, should be there) # use the same data as in savegaze() (no need for file retrieval, should be there)
dl.install(op.join('data', 'raw_eyegaze'))
infiles = [ infiles = [
op.join( op.join(
'data', 'data',
@ -631,6 +632,7 @@ def plot_raw_vel_trace():
# load data # load data
for i, f in enumerate(infiles): for i, f in enumerate(infiles):
# read data # read data
dl.get(f)
data = np.recfromcsv(f, data = np.recfromcsv(f,
delimiter='\t', delimiter='\t',
names=['x', 'y', 'pupil', 'frame']) names=['x', 'y', 'pupil', 'frame'])
@ -690,7 +692,6 @@ def savegaze():
""" """
from remodnav.tests import utils as ut from remodnav.tests import utils as ut
import pylab as pl import pylab as pl
import datalad.api as dl
# use two examplary files (lab + MRI) used during testing as well # use two examplary files (lab + MRI) used during testing as well
# hardcoding those, as I see no reason for updating them # hardcoding those, as I see no reason for updating them
@ -1012,7 +1013,6 @@ def plot_dist(figures):
if not figures: if not figures:
return return
import datalad.api as dl
dl.install(op.join('data', 'studyforrest-data-eyemovementlabels')) dl.install(op.join('data', 'studyforrest-data-eyemovementlabels'))
datapath = op.join('data', datapath = op.join('data',
'studyforrest-data-eyemovementlabels', 'studyforrest-data-eyemovementlabels',