Michael Hanke
6477761b7f
The location and access methods for data will change over time. Only the essence of transforming input data into results is to be captured with the container environment. The error surface due to changes in the evolving data infrastructure will be minimized by provisioning the data outside and before the container environment is invoked.
37 lines
1.2 KiB
Docker
37 lines
1.2 KiB
Docker
# syntax=docker/dockerfile:1
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FROM continuumio/miniconda3:23.10.0-1 AS builder
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RUN apt-get update && apt-get install -y \
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build-essential
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WORKDIR /tmp/
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RUN wget https://mirrors.sarata.com/gnu/gsl/gsl-2.7.tar.gz && \
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tar -zxvf gsl-2.7.tar.gz && \
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cd gsl-2.7 && \
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./configure && \
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make -j 8 && \
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make install && \
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cd .. && \
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rm -rf gsl-2.7.tar.gz gsl-2.7
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COPY environment.yml /tmp/environment.yml
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RUN conda env create -f /tmp/environment.yml && \
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conda clean -a && conda init bash && echo "conda activate $(head -1 environment.yml | cut -d' ' -f2)" >> ~/.bashrc && \
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rm environment.yml
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FROM continuumio/miniconda3:23.10.0-1
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RUN apt-get update && apt-get install -y \
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build-essential \
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ghostscript
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RUN mkdir /app
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COPY --from=builder /opt/conda/envs/ClusteredNetwork_pub /opt/conda/envs/ClusteredNetwork_pub
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COPY --from=builder /usr/local/lib /usr/local/lib
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RUN echo "export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib" >> /root/.bashrc && \
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echo "export CFLAGS="-I/usr/local/include"" >> /root/.bashrc && \
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echo "export LDFLAGS="-L/usr/local/lib"" >> /root/.bashrc && \
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echo "conda activate ClusteredNetwork_pub" >> ~/.bashrc
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WORKDIR /app/
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