Michael Hanke
bdac0e1c1d
Recently the original virtualenv-baseed approach started to fall apart, because mutual incompatibilities between the dependencies (some pinned at old versions) increased. This changeset provides a container recipe to generate a modern (or most modern, given todays possibilities) environment to still reproduce the analysis. The container image can be built with ``` docker build -t remodnav:latest container ``` And the manuscript can be generated with ``` docker run -v $PWD:/tmp -w /tmp --rm --interactive --tty \ -u $(id -u):$(id -g) -e HOME=/tmp \ remodnav:latest \ make -f Docker-Makefile main.pdf ``` This does not reproduce everything exactly. There is a small (I'd say insignificant) change in one panel of a Fig 4. The full backstory and analysis of the cause is in https://github.com/psychoinformatics-de/paper-remodnav/issues/20. However, besides that **all** reported statistical scores and performance measures reported in the paper remain identical. Not that execution inside the container requires all inputs to be provisioned before. Here is the specification - remodnav/remodnav/tests/data/anderson_etal - remodnav/remodnav/tests/data/studyforrest - data/studyforrest-data-eyemovementlabels/*/*.tsv - data/raw_eyegaze/sub-*/ses-movie/func/*_recording-eyegaze_physio.tsv.gz - data/raw_eyegaze/sub-*/beh/*_recording-eyegaze_physio.tsv.gz This will again be automated in a future changeset, based on a container-run provenance record.
23 lines
567 B
Text
23 lines
567 B
Text
# use `chronic` to make output look neater, if available
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CHRONIC=$(shell which chronic || echo '' )
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PYTHON=python3
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all: main.pdf
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main.pdf: main.tex results_def.tex references.bib
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$(MAKE) main.pdf
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# the stats-script outputs all scores and figures
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results_def.tex: code/mk_figuresnstats.py
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@echo "# Ensure REMODNAV installation"
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@$(CHRONIC) $(PYTHON) -m pip install --break-system-packages -e remodnav
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@rm -f $@
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@REMODNAV_RESULTS=$@ $(PYTHON) code/mk_figuresnstats.py -s -f -r -m
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clean:
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$(MAKE) clean
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rm -rf .cache .config .local .texlive*
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.PHONY: clean
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