Docker-Makefile

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+# use `chronic` to make output look neater, if available
+CHRONIC=$(shell which chronic || echo '' )
+
+PYTHON=python3
+
+
+all: main.pdf
+
+main.pdf: main.tex results_def.tex references.bib 
+	$(MAKE) main.pdf
+
+# the stats-script outputs all scores and figures
+results_def.tex: code/mk_figuresnstats.py
+	@echo "# Ensure REMODNAV installation"
+	@$(CHRONIC) $(PYTHON) -m pip install --break-system-packages -e remodnav
+	@rm -f $@
+	@REMODNAV_RESULTS=$@ $(PYTHON) code/mk_figuresnstats.py -s -f -r -m
+
+clean:
+	$(MAKE) clean
+	rm -rf .cache .config .local .texlive*
+
+.PHONY: clean

container/Dockerfile

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+FROM debian:bookworm-slim
+
+ENV DEBIAN_FRONTEND=noninteractive
+RUN apt-get update -qq -y --allow-releaseinfo-change && \
+# basic tooling we need for building/installing
+apt-get install -q --no-install-recommends -y make && \
+# for compiling custom python package installs
+apt-get install -q --no-install-recommends -y build-essential python3-dev && \
+# any python package we do NOT need to compile
+apt-get install -q --no-install-recommends -y python3-virtualenv python3-wheel python3-scipy python3-sklearn python3-statsmodels python3-pyparsing python3-pil python3-pip && \
+# now python packages that we need specific versions of
+# we need the following packages pinned
+# - matplotlib for a particular SVG file content (structure)
+# - pandas as the last per v2 release for an API incompatibility that with 2x
+# - seaborn for minor changes in figure composition in later versions
+# - and numpy...the version does not matter, but it has to be different from
+#   the Debian-provided one, such that pip will compile it
+#   full and long story at
+#   https://github.com/psychoinformatics-de/paper-remodnav/issues/20
+python3 -m pip install --break-system-packages numpy==1.24.3 pandas==1.5.3 seaborn==0.10.1 matplotlib==3.4.3 && \
+# now the pieces we need to build the PDF
+apt-get install -q --no-install-recommends -y inkscape latexmk texlive-latex-extra && \
+# trim the image size
+rm -rf /root/.local /root/.cache /var/lib/apt/lists/deb.debian.org* ; \
+apt-get purge -y build-essential ; \
+apt-get autoremove -y ; \
+apt-get clean