tools/outputs/data_dictionary.json
Stephan Heunis a7ded698d2 Restructure data/inputs/outputs and generate new output files
Move some files to 'outputs'
add shacl group data to 'data', to be used for generating ui-annotated shacl shapes
generate a shacl shapes graph from the neurobagel annotated sdd schema
generate minimal owl  from the neurobagel annotated sdd schema

All of these outputs can now be used as inputs to shacl-vue
2024-09-24 10:59:39 +02:00

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JSON

{
"participant_id": {
"Description": "A participant ID",
"Annotations": {
"IsAbout": {
"TermURL": "nb:ParticipantID",
"Label": "Unique subjectdentifier"
},
"Identifies": "participant"
}
},
"session_id": {
"Description": "A session ID",
"Annotations": {
"IsAbout": {
"TermURL": "nb:SessionID",
"Label": "Unique session identifier"
},
"Identifies": "session"
}
},
"pheno_age": {
"Description": "A session ID",
"Annotations": {
"IsAbout": {
"TermURL": "nb:Age",
"Label": "Chronological age"
},
"Transformation": {
"TermURL": "nb:FromEuro",
"Label": "European decimal value"
},
"MissingValues": [
"NA"
]
}
},
"pheno_sex": {
"Description": "Sex variable",
"Annotations": {
"IsAbout": {
"TermURL": "nb:Sex",
"Label": "Sex"
},
"Levels": {
"M": {
"TermURL": "snomed:248153007",
"Label": "Male"
},
"F": {
"TermURL": "snomed:248152002",
"Label": "Female"
}
},
"MissingValues": [
"missing"
]
},
"Levels": {
"M": "Male",
"F": "Female"
}
},
"pheno_group": {
"Description": "Group variable",
"Annotations": {
"IsAbout": {
"TermURL": "nb:Diagnosis",
"Label": "Diagnosis"
},
"Levels": {
"PAT": {
"TermURL": "snomed:406506008",
"Label": "Attention deficit hyperactivity disorder"
},
"CTRL": {
"TermURL": "ncit:C94342",
"Label": "Healthy Control"
}
},
"MissingValues": [
"NA"
]
},
"Levels": {
"PAT": "Patient",
"CTRL": "Control subject"
}
},
"tool1_item1": {
"Description": "Item 1 score for the Montreal Cognitive Assessment",
"Annotations": {
"IsAbout": {
"TermURL": "nb:Assessment",
"Label": "Assessment tool"
},
"IsPartOf": {
"TermURL": "cogatlas:trm_57964b8a66aed",
"Label": "Montreal Cognitive Assessment"
},
"MissingValues": [
"missing"
]
}
},
"tool1_item2": {
"Description": "Item 2 score for the Montreal Cognitive Assessment",
"Annotations": {
"IsAbout": {
"TermURL": "nb:Assessment",
"Label": "Assessment tool"
},
"IsPartOf": {
"TermURL": "cogatlas:trm_57964b8a66aed",
"Label": "Montreal Cognitive Assessment"
},
"MissingValues": [
"missing"
]
}
},
"tool2_item1": {
"Description": "Item 1 score for the Unified Parkinson's Disease Rating Scale",
"Annotations": {
"IsAbout": {
"TermURL": "nb:Assessment",
"Label": "Assessment tool"
},
"IsPartOf": {
"TermURL": "cogatlas:tsk_4a57abb949ece",
"Label": "Unified Parkinson's Disease Rating Scale"
},
"MissingValues": [
"not completed"
]
}
}
}