Stephan Heunis
ca7af32894
This is an interim solution in the form of shell scripts to fetch datalad-concepts exports (shacl, owl) and to convert example data to rdf, to allow using all of those as the default files for a shacl-vue deployment. The ideal is to rather create a single base schema in yaml, similar to the standard that we have followed in other use cases e.g. trr379, inm7, etc, and to update the make files that generate the schemas and data from there.
872 lines
37 KiB
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872 lines
37 KiB
Turtle
@prefix ADMS: <http://www.w3.org/ns/adms#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix dlco: <https://concepts.datalad.org/> .
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@prefix dldist: <https://concepts.datalad.org/s/distribution/unreleased/> .
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@prefix dlidentifiers: <https://concepts.datalad.org/s/identifiers/unreleased/> .
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@prefix dlprops: <https://concepts.datalad.org/s/properties/unreleased/> .
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@prefix dlprov: <https://concepts.datalad.org/s/prov/unreleased/> .
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@prefix dlpubs: <https://concepts.datalad.org/s/publications/unreleased/> .
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@prefix dlres: <https://concepts.datalad.org/s/resources/unreleased/> .
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@prefix dlroles: <https://concepts.datalad.org/s/roles/unreleased/> .
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@prefix dlsocial: <https://concepts.datalad.org/s/social/unreleased/> .
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@prefix dlspatial: <https://concepts.datalad.org/s/agents/unreleased/> .
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@prefix dltemporal: <https://concepts.datalad.org/s/agents/unreleased/> .
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@prefix dlthings: <https://concepts.datalad.org/s/things/v1/> .
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@prefix ex: <http://example.org/> .
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@prefix exthisns: <https://example.org/ns/> .
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@prefix foaf: <http://xmlns.com/foaf/0.1/> .
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@prefix gitsha: <https://concepts.datalad.org/ns/gitsha/> .
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@prefix licenses: <http://spdx.org/licenses/> .
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@prefix marcrel: <http://id.loc.gov/vocabulary/relators/> .
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@prefix obo: <http://purl.obolibrary.org/obo/> .
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@prefix owl: <http://www.w3.org/2002/07/owl#> .
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
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@prefix w3ctr: <https://www.w3.org/TR/> .
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
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ex:second a dltemporal:InstantaneousEvent ;
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dltemporal:at_time "1982-01-59T15:32:44"^^w3ctr:NOTE-datetime .
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<https://en.wikipedia.org/wiki/Death_of_Freddie_Mercury> a dltemporal:InstantaneousEvent .
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ex:triassic a dltemporal:InstantaneousEvent ;
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dltemporal:at_time "-201000000"^^w3ctr:NOTE-datetime .
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ex:year a dltemporal:InstantaneousEvent ;
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dltemporal:at_time "1532"^^w3ctr:NOTE-datetime .
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ex:subsecond-with-timezone a dltemporal:InstantaneousEvent ;
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dltemporal:at_time "2021-01-31T01:22:33.4321+06:00"^^w3ctr:NOTE-datetime .
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ex:month a dltemporal:InstantaneousEvent ;
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dltemporal:at_time "1785-02"^^w3ctr:NOTE-datetime .
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ex:min a dltemporal:InstantaneousEvent ;
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dltemporal:at_time "1984-05-14T15:32"^^w3ctr:NOTE-datetime .
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ex:day a dltemporal:InstantaneousEvent ;
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dltemporal:at_time "1984-05-14"^^w3ctr:NOTE-datetime .
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<http://example.org/ns/people/jane> a dlprov:Agent ;
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dlroles:qualified_relations [ a dlroles:Relationship ;
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rdf:object "geo:-19.738897,63.453072?z=19"^^xsd:anyURI ;
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dlroles:roles obo:NCIT_C17556 ] .
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<http://orcid.org/0000-0001-7628-0801> a dlprov:Agent .
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<https://orcid.org/0000-0001-6398-6370> a dlprov:Agent ;
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dlprov:acted_on_behalf_of <https://ror.org/02nv7yv05> ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate foaf:name ;
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rdfs:value "Michael Hanke" ],
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[ a dlthings:AttributeSpecification ;
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rdf:predicate <http://www.bioassayontology.org/bao#BAO_0002826> ;
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rdfs:value "1" ] .
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<https://doi.org/10.1038/s41597-022-01163-2> a dlpubs:Publication ;
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dlprops:about "https://www.nature.com/subjects/data-processing"^^xsd:anyURI,
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"https://www.nature.com/subjects/data-publication-and-archiving"^^xsd:anyURI,
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"https://www.nature.com/subjects/software"^^xsd:anyURI ;
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dlprops:description "Large-scale datasets present unique opportunities to perform scientific investigations with unprecedented breadth. However, they also pose considerable challenges for the findability, accessibility, interoperability, and reusability (FAIR) of research outcomes due to infrastructure limitations, data usage constraints, or software license restrictions. Here we introduce a DataLad-based, domain-agnostic framework suitable for reproducible data processing in compliance with open science mandates. The framework attempts to minimize platform idiosyncrasies and performance-related complexities. It affords the capture of machine-actionable computational provenance records that can be used to retrace and verify the origins of research outcomes, as well as be re-executed independent of the original computing infrastructure. We demonstrate the framework’s performance using two showcases: one highlighting data sharing and transparency (using the studyforrest.org dataset) and another highlighting scalability (using the largest public brain imaging dataset available: the UK Biobank dataset)." ;
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dlprops:title "FAIRly big: A framework for computationally reproducible processing of large-scale data" ;
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dltemporal:date_modified "2022-02-11"^^w3ctr:NOTE-datetime ;
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dltemporal:date_published "2022-03-11"^^w3ctr:NOTE-datetime .
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<https://doi.org/10.1038/s41597-022-01163-2> a dlpubs:Publication .
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<https://doi.org/10.1038/s41597-022-01163-2> a dlpubs:Publication ;
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dlidentifiers:identifier [ a dlidentifiers:DOI ;
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dlidentifiers:creator "https://doi.org"^^xsd:anyURI ;
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dlidentifiers:notation "10.1038/s41597-022-01163-2" ;
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dlidentifiers:schema_agency "DOI Foundation" ] ;
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dlroles:qualified_relations [ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0001-7163-3110"^^xsd:anyURI ;
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dlroles:roles marcrel:aut ],
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[ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0003-2213-7465"^^xsd:anyURI ;
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dlroles:roles marcrel:aut,
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obo:MS_1002034 ],
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[ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0001-6398-6370"^^xsd:anyURI ;
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dlroles:roles marcrel:aut,
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obo:MS_1002035 ],
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[ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0001-7628-0801"^^xsd:anyURI ;
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dlroles:roles marcrel:aut ],
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[ a dlroles:Relationship ;
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rdf:object "https://portal.issn.org/resource/issn/2052-4463"^^xsd:anyURI ;
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dlroles:roles marcrel:pup ],
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[ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0003-0820-2662"^^xsd:anyURI ;
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dlroles:roles marcrel:aut,
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obo:MS_1002034 ],
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[ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0003-2917-3450"^^xsd:anyURI ;
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dlroles:roles marcrel:aut,
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obo:MS_1002034,
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obo:NCIT_C25461 ],
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[ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0001-6363-2759"^^xsd:anyURI ;
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dlroles:roles marcrel:aut ],
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[ a dlroles:Relationship ;
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rdf:object "https://orcid.org/0000-0002-8402-6173"^^xsd:anyURI ;
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dlroles:roles marcrel:aut ] .
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<https://gepris.dfg.de/gepris/projekt/546006540> a dlres:Grant .
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<https://gepris.dfg.de/gepris/projekt/546006540> a dlres:Grant ;
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dlres:sponsor <https://ror.org/018mejw64> .
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<https://example.org/ns/datasetversion/./some/name.ext> a dldist:Distribution ;
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dltemporal:date_modified "2024-03-21"^^w3ctr:NOTE-datetime ;
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dldist:byte_size "123456789"^^xsd:nonNegativeInteger ;
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dldist:checksum [ a dlidentifiers:Checksum ;
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dlidentifiers:creator "spdx:checksumAlgorithm_sha1"^^xsd:anyURI ;
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dlidentifiers:notation "c7dbac946b9860cf05a7d696b9e9591c60083859"^^xsd:hexBinary ],
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[ a dlidentifiers:Checksum ;
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dlidentifiers:creator "spdx:checksumAlgorithm_md5"^^xsd:anyURI ;
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dlidentifiers:notation "32a617360d10e3dcbfdd0885e8d64ab8"^^xsd:hexBinary ] ;
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dldist:license licenses:CC0-1.0 ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate foaf:name ;
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rdfs:value "name.ext" ] .
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<https://example.org/ns/datasetversion/.> a dldist:Distribution ;
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dldist:has_part <https://example.org/ns/datasetversion/./dataset_description.json>,
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<https://example.org/ns/datasetversion/./participants.tsv> ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ex:conformsTo ;
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rdfs:range "uri"^^xsd:anyURI ;
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rdfs:value "https://bids-specification.readthedocs.io/en/v1.4.0" ] .
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<https://example.org/ns/datasetversion/./dataset_description.json> a dldist:Distribution ;
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dldist:media_type "application/json" .
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<https://example.org/ns/datasetversion/./participants.tsv> a dldist:Distribution ;
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dldist:format "http://edamontology.org/format_3475"^^xsd:anyURI .
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<https://example.org/ns/datasetversion/./file.jpeg> a dldist:Distribution ;
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dlroles:qualified_relations [ a dlroles:Relationship ;
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rdf:object "obo:NCIT_C95650"^^xsd:anyURI ;
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dlroles:roles obo:NCIT_C42645 ] ;
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dlthings:characterized_by [ a dlthings:Statement ;
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rdf:object "obo:NCIT_C95650"^^xsd:anyURI ;
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rdf:predicate obo:NCIT_C42645 ] .
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gitsha:e12e9505cff5417f594d719b99720b4c39d86434 a dldist:Distribution ;
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dldist:byte_size "63165"^^xsd:nonNegativeInteger ;
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dldist:checksum [ a dlidentifiers:Checksum ;
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dlidentifiers:creator "spdx:checksumAlgorithm_sha1"^^xsd:anyURI ;
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dlidentifiers:notation "0410b851ebd2282ac37558885db16782f31626db"^^xsd:hexBinary ] ;
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dldist:media_type "text/html" .
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<https://concepts.datalad.org/ns/annex-key/MD5E-s3214--ba1f2511fc30423bdbb183fe33f3dd0f.csv> a dldist:Distribution ;
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dlco:qualified_access [ a dldist:QualifiedAccess ;
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dldist:access_service <https://concepts.datalad.org/ns/annex-uuid/0a8713ca-ef42-11ee-a805-d3e9a774e795> ] .
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<https://example.org/ns/datasetversion/./some/path.ext> a dldist:Distribution ;
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dldist:is_distribution_of <https://example.org/ns/datasetversion/#some/path> ;
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dlthings:relation <https://example.org/ns/dataset/#>,
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<https://example.org/ns/datasetversion/#>,
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<https://example.org/ns/datasetversion/#some/path> .
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<https://example.org/ns/dataset/#> a dldist:Resource ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ex:description ;
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rdfs:value "A collection of some data" ] .
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<https://example.org/ns/datasetversion/#> a dldist:Resource ;
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dldist:is_version_of <https://example.org/ns/dataset/#> ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ex:description ;
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rdfs:value "A version of a collection of some data\"" ] .
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<https://example.org/ns/datasetversion/#some/path> a dldist:Resource ;
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dldist:is_part_of <https://example.org/ns/datasetversion/#> ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ex:description ;
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rdfs:value "Some tabular data" ] .
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gitsha:9a48c2bf7e97a081f2b1ab68eb909bbfc86267be a dldist:Distribution ;
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dldist:is_distribution_of gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f ;
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dldist:qualified_part [ a dldist:DistributionPart ;
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rdf:object "https://concepts.datalad.org/ns/gitsha/e12e9505cff5417f594d719b99720b4c39d86434"^^xsd:anyURI ;
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dlprops:name "index.html" ],
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[ a dldist:DistributionPart ;
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rdf:object "https://concepts.datalad.org/ns/annex-key/MD5E-s3214--ba1f2511fc30423bdbb183fe33f3dd0f.csv"^^xsd:anyURI ;
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dlprops:name "table.csv" ] .
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<https://example.org/ns/datasetversion/./archive.zip> a dldist:Distribution ;
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dldist:has_part <https://example.org/ns/datasetversion/./archive.zip/subdir> ;
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dldist:qualified_part [ a dldist:DistributionPart ;
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rdf:object "exthisdsver:./archive.zip/subdir"^^xsd:anyURI ;
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dlprops:name "subdir" ] .
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<https://example.org/ns/datasetversion/./archive.zip/subdir> a dldist:Distribution ;
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dldist:has_part <https://example.org/ns/datasetversion/./archive.zip/subdir/file.txt> ;
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dldist:qualified_part [ a dldist:DistributionPart ;
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rdf:object "exthisdsver:./archive.zip/subdir/file.txt"^^xsd:anyURI ;
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dlprops:name "file.txt" ] ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ex:description ;
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rdfs:value "A subdirectory" ] .
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<https://example.org/ns/datasetversion/./archive.zip/subdir/file.txt> a dldist:Distribution ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ex:description ;
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rdfs:value "A file" ] .
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<https://example.org/ns/datasetversion/./some/path.ext> a dldist:Distribution ;
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dldist:license <https://example.org/ns/dataset/#customlicense> ;
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dlthings:relation <https://example.org/ns/dataset/#customlicense> .
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<https://example.org/ns/dataset/#customlicense> a dldist:LicenseDocument ;
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dldist:license_text "Highly custom terms, never seen before." .
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<https://concepts.datalad.org/ns/annex-key/MD5E-s3214--ba1f2511fc30423bdbb183fe33f3dd0f.csv> a dldist:Distribution ;
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dldist:byte_size "3214"^^xsd:nonNegativeInteger ;
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dldist:checksum [ a dlidentifiers:Checksum ;
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dlidentifiers:creator "spdx:checksumAlgorithm_md5"^^xsd:anyURI ;
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dlidentifiers:notation "ba1f2511fc30423bdbb183fe33f3dd0f"^^xsd:hexBinary ] ;
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dldist:media_type "text/csv" .
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gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f a dldist:Resource ;
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dldist:is_version_of <https://concepts.datalad.org/ns/dataset-uuid/cec1da92-0dbd-4df3-8602-7c72b2d12854> ;
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dldist:version "8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f" ;
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dlprov:derived_from gitsha:a52963ce19a3e3628e9976555ffc8c422b29f054 ;
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dlprov:generated_by <https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing> ;
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dlroles:qualified_relations [ a dlroles:Relationship ;
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rdf:object "gitsha:a52963ce19a3e3628e9976555ffc8c422b29f054"^^xsd:anyURI ;
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dlroles:roles owl:priorVersion ] ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ex:identifier ;
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rdfs:value "latest" ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ADMS:schemaAgency ;
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rdfs:value "exthisds:#" ] ],
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[ a dlthings:AttributeSpecification ;
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rdf:predicate ex:description ;
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rdfs:value """This message describes the changes done for this particular Dataset version.
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""" ],
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[ a dlthings:AttributeSpecification ;
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rdf:predicate ex:identifier ;
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rdfs:value "final2" ;
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dlthings:attributes [ a dlthings:AttributeSpecification ;
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rdf:predicate ADMS:schemaAgency ;
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rdfs:value "exthisds:#" ] ] ;
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dlthings:relation <https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring>,
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<https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing> .
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<https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring> a dlprov:Activity ;
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skos:exactMatch "obo:NCIT_C25625"^^xsd:anyURI ;
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dltemporal:ended_at "2001-02-28T18:27:04+02:00"^^w3ctr:NOTE-datetime ;
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dlroles:qualified_relations [ a dlroles:Relationship ;
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rdf:object "exthisds:#gituser_doe@example.org"^^xsd:anyURI ;
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dlroles:roles marcrel:aut ] .
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<https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing> a dlprov:Activity ;
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skos:exactMatch "obo:NCIT_C42882"^^xsd:anyURI ;
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dltemporal:ended_at "2002-05-30T09:30:10+06:00"^^w3ctr:NOTE-datetime ;
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dlprov:informed_by <https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring> ;
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dlroles:qualified_relations [ a dlroles:Relationship ;
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rdf:object "exthisds:#gituser_doe@example.org"^^xsd:anyURI ;
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dlroles:roles marcrel:cre ] .
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<https://example.org/ns/datasetversion/./some/path.ext> a dldist:Distribution ;
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dlco:qualified_access [ a dldist:QualifiedAccess ;
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dldist:access_service <https://coscine.example.org> ] ;
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dldist:access_service <https://coscine.example.org> ;
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dldist:access_url "https://coscine.example.org/coscine"^^xsd:anyURI ;
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dldist:download_url "https://coscine.example.org/coscine/api/v2/projects/p123/resources/r456/blobs/k789"^^xsd:anyURI,
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"https://www.example.org/path.ext"^^xsd:anyURI ;
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dlthings:relation <https://coscine.example.org> .
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<https://coscine.example.org> a dldist:DataService ;
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skos:exactMatch "https://coscine.rwth-aachen.de"^^xsd:anyURI ;
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dldist:contact_point exthisns:coscine-admin ;
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dldist:download_url_template "https://coscine.example.org/coscine/api/v2/projects/{projectId}/resources/{resourceId}/blobs/{key}" ;
|
||
dldist:endpoint_description "https://coscine.rwth-aachen.de/coscine/api/swagger/v2/swagger.json"^^xsd:anyURI ;
|
||
dldist:endpoint_url "https://coscine.example.org/coscine"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:description ;
|
||
rdfs:value "Central RDM service at example.org" ] .
|
||
|
||
|
||
|
||
<https://concepts.datalad.org/ns/dataset-uuid/cec1da92-0dbd-4df3-8602-7c72b2d12854> a dldist:Resource ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:identifier ;
|
||
skos:exactMatch "ADMS:Identifier"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate skos:notation ;
|
||
rdfs:value "cec1da92-0dbd-4df3-8602-7c72b2d12854" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schemaAgency ;
|
||
rdfs:value "https://datalad.org" ] ] .
|
||
|
||
|
||
|
||
<https://example.org/ns/datasetversion/#> a dldist:Resource ;
|
||
dlprov:generated_by <https://example.org/ns/dataset/#study_2005-004406-93> ;
|
||
dlthings:relation <https://example.org/ns/dataset/#s001>,
|
||
<https://example.org/ns/dataset/#s002>,
|
||
<https://example.org/ns/dataset/#study_2005-004406-93> .
|
||
|
||
<https://example.org/ns/dataset/#s001> a dlprov:Agent ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate foaf:name ;
|
||
rdfs:value "s001" ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object "obo:PATO_0002204"^^xsd:anyURI ;
|
||
rdf:predicate obo:PATO_0002201 ] .
|
||
|
||
<https://example.org/ns/dataset/#s002> a dlprov:Agent ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate foaf:name ;
|
||
rdfs:value "s002" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate obo:NCIT_C37908 ;
|
||
rdfs:value "36" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate foaf:name ;
|
||
rdfs:value "age (years)" ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object "obo:UO_0000036"^^xsd:anyURI ;
|
||
rdf:predicate obo:UO_0000000 ] ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object "obo:PATO_0000384"^^xsd:anyURI ;
|
||
rdf:predicate obo:PATO_0000047 ] .
|
||
|
||
<https://example.org/ns/dataset/#study_2005-004406-93> a dlprov:Activity ;
|
||
skos:exactMatch "obo:NCIT_C71104"^^xsd:anyURI ;
|
||
dlroles:qualified_relations [ a dlroles:Relationship ;
|
||
rdf:object "exthisds:#s002"^^xsd:anyURI ;
|
||
dlroles:roles obo:NCIT_C142710,
|
||
obo:NCIT_C173188 ],
|
||
[ a dlroles:Relationship ;
|
||
rdf:object "exthisds:#s001"^^xsd:anyURI ;
|
||
dlroles:roles obo:NCIT_C142710,
|
||
obo:NCIT_C94342 ] ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "Study about the effectiveness of a disease treatment" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:identifier ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate skos:notation ;
|
||
rdfs:value "2005-004406-93" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schema_agency ;
|
||
rdfs:value "https://eudract.ema.europa.eu" ] ] .
|
||
|
||
|
||
|
||
<https://concepts.datalad.org/ns/annex-uuid/0a8713ca-ef42-11ee-a805-d3e9a774e795> a dldist:DataService ;
|
||
skos:exactMatch "https://git-annex.branchable.com/special_remotes"^^xsd:anyURI ;
|
||
dldist:endpoint_description "https://git-annex.branchable.com/special_remotes/webdav/"^^xsd:anyURI ;
|
||
dldist:endpoint_url "https://dav.box.com/dav/git-annex"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:identifier ;
|
||
skos:exactMatch "ADMS:Identifier"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate skos:notation ;
|
||
rdfs:value "0a8713ca-ef42-11ee-a805-d3e9a774e795" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schemaAgency ;
|
||
rdfs:value "https://git-annex.branchable.com" ] ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate foaf:name ;
|
||
rdfs:value "box.com" ] .
|
||
|
||
|
||
|
||
[] a dlroles:Relationship ;
|
||
rdf:object <https://en.wikipedia.org/wiki/Vulcan_(Star_Trek)#Mind_melds> ;
|
||
dlroles:roles <http://purl.obolibrary.org/obo/topic_0003> .
|
||
|
||
|
||
|
||
[] a dlroles:Relationship ;
|
||
rdf:object <https://en.wikipedia.org/wiki/Vulcan_(Star_Trek)#Mind_melds> ;
|
||
dlroles:roles <http://purl.obolibrary.org/obo/topic_0003> .
|
||
|
||
|
||
|
||
marcrel:this a dlroles:Role .
|
||
|
||
|
||
|
||
marcrel:this a dlroles:Role .
|
||
|
||
|
||
|
||
marcrel:pdr a dlroles:Role ;
|
||
dlthings:annotations [ a dlthings:Annotation ;
|
||
dlthings:annotation_tag skos:prefLabel ;
|
||
dlthings:annotation_value "Project director" ] ;
|
||
dlthings:description "A person or organization with primary responsibility for all essential aspects of a project, has overall responsibility for managing projects, or provides overall direction to a project manager" .
|
||
|
||
|
||
|
||
marcrel:pdr a dlroles:Role ;
|
||
dlthings:annotations [ a dlthings:Annotation ;
|
||
dlthings:annotation_tag skos:prefLabel ;
|
||
dlthings:annotation_value "Project director" ] ;
|
||
dlthings:description "A person or organization with primary responsibility for all essential aspects of a project, has overall responsibility for managing projects, or provides overall direction to a project manager" .
|
||
|
||
|
||
|
||
[] a dlroles:Relationship ;
|
||
rdf:object <https://orcid.org/0000-0001-6398-6370> ;
|
||
dlroles:roles marcrel:aut,
|
||
marcrel:sad .
|
||
|
||
|
||
|
||
[] a dlroles:Relationship ;
|
||
rdf:object <https://orcid.org/0000-0001-6398-6370> ;
|
||
dlroles:roles marcrel:aut,
|
||
marcrel:sad .
|
||
|
||
|
||
|
||
[] a dlidentifiers:IssuedIdentifier ;
|
||
dlidentifiers:creator "https://orcid.org"^^xsd:anyURI ;
|
||
dlidentifiers:notation "0000-0001-6398-6370" ;
|
||
dlidentifiers:schema_agency "ORCID" .
|
||
|
||
|
||
|
||
[] a dlidentifiers:Checksum ;
|
||
dlidentifiers:creator "spdx:checksumAlgorithm_md5"^^xsd:anyURI ;
|
||
dlidentifiers:notation "be32eeadb443c00c3e6ca43f2295e2ee"^^xsd:hexBinary .
|
||
|
||
|
||
|
||
[] a dlidentifiers:DOI ;
|
||
dlidentifiers:creator "https://op.europa.eu"^^xsd:anyURI ;
|
||
dlidentifiers:notation "10.2760/271009" ;
|
||
dlidentifiers:schema_agency "Publications Office of the European Union" .
|
||
|
||
|
||
|
||
[] a dlidentifiers:Identifier ;
|
||
dlidentifiers:notation "0000-0001-6398-6370" .
|
||
|
||
|
||
|
||
[] a dlidentifiers:Identifier ;
|
||
dlidentifiers:creator "https://orcid.org"^^xsd:anyURI ;
|
||
dlidentifiers:notation "0000-0001-6398-6370" .
|
||
|
||
|
||
|
||
[] a dlidentifiers:DOI ;
|
||
dlidentifiers:creator "https://doi.org"^^xsd:anyURI ;
|
||
dlidentifiers:notation "10.1038/s41597-022-01163-2" ;
|
||
dlidentifiers:schema_agency "DOI Foundation" .
|
||
|
||
|
||
|
||
[] a dlidentifiers:IssuedIdentifier ;
|
||
dlidentifiers:notation "0000-0001-6398-6370" .
|
||
|
||
|
||
|
||
<http://example.org/ns/people/jane> a dlsocial:Person ;
|
||
dlroles:qualified_relations [ a dlroles:Relationship ;
|
||
rdf:object "email:jane@example.org"^^xsd:anyURI ;
|
||
dlroles:roles <http://schema.org/email> ],
|
||
[ a dlroles:Relationship ;
|
||
rdf:object "geo:-19.738897,63.453072?z=19"^^xsd:anyURI ;
|
||
dlroles:roles obo:NCIT_C17556 ] .
|
||
|
||
|
||
|
||
<http://example.org/projects/p1a> a dlsocial:Project ;
|
||
dlprops:description "A project about approaching a new field, and not looking entirely incompetent after some time." ;
|
||
dlprops:short_name "BANG!" ;
|
||
dlprops:title "Impactful entry" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate <http://example.org/ns/psych/self-esteem-boost-potential> ;
|
||
rdfs:range "linkml:int"^^xsd:anyURI ;
|
||
rdfs:value "100" ] .
|
||
|
||
|
||
|
||
<http://example.org/projects/p1a> a dlsocial:Project ;
|
||
dlprov:associated_with <http://orcid.org/0000-0001-6398-6370> ;
|
||
dlroles:qualified_relations [ a dlroles:Relationship ;
|
||
rdf:object "http://orcid.org/0000-0001-6398-6370"^^xsd:anyURI ;
|
||
dlroles:roles marcrel:ctb ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object "ex:projects/grand-plan"^^xsd:anyURI ;
|
||
rdf:predicate ex:isPartOf ] .
|
||
|
||
|
||
|
||
<https://orcid.org/0000-0001-6398-6370> a dlsocial:Person ;
|
||
dlprov:acted_on_behalf_of <https://ror.org/02nv7yv05> ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate <http://www.bioassayontology.org/bao#BAO_0002826> ;
|
||
rdfs:value "1" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate foaf:name ;
|
||
rdfs:value "Michael Hanke" ] .
|
||
|
||
|
||
|
||
<http://example.org/projects/p1a> a dlsocial:Project .
|
||
|
||
|
||
|
||
<https://trr379.de> a dlsocial:Organization ;
|
||
dlroles:qualified_relations [ a dlroles:Relationship ;
|
||
rdf:object "https://ror.org/018mejw64"^^xsd:anyURI ;
|
||
dlroles:roles marcrel:fnd ] .
|
||
|
||
|
||
|
||
<http://orcid.org/0000-0001-7628-0801> a dlsocial:Person .
|
||
|
||
|
||
|
||
<http://example.org/ns/zorro> a dlsocial:Person ;
|
||
dlsocial:additional_names "Zorro" ;
|
||
dlsocial:family_name "de la Vega" ;
|
||
dlsocial:formatted_name "Don Diego Zorro de la Vega III" ;
|
||
dlsocial:given_name "Diego" ;
|
||
dlsocial:honorific_name_prefix "Don" ;
|
||
dlsocial:honorific_name_suffix "III" .
|
||
|
||
|
||
|
||
<https://ror.org/018mejw64> a dlsocial:Organization .
|
||
|
||
|
||
|
||
<https://ror.org/018mejw64> a dlsocial:Organization ;
|
||
dltemporal:at_location <https://geonames.org/2946447> ;
|
||
dlidentifiers:identifier [ a dlidentifiers:Identifier ;
|
||
dlidentifiers:creator "https://wikidata.org"^^xsd:anyURI ;
|
||
dlidentifiers:notation "Q707283" ],
|
||
[ a dlidentifiers:Identifier ;
|
||
dlidentifiers:creator "https://crossref.org"^^xsd:anyURI ;
|
||
dlidentifiers:notation "501100001659" ] ;
|
||
dlprops:name "Deutsche Forschungsgemeinschaft" ;
|
||
dlprops:short_name "DFG" .
|
||
|
||
|
||
|
||
<https://doi.org/10.21105/joss.03262> a dlthings:Thing ;
|
||
dlthings:relation <https://portal.issn.org/resource/issn/2475-9066>,
|
||
<https://www.scicrunch.org/resolver/SCR_003931> .
|
||
|
||
<https://portal.issn.org/resource/issn/2475-9066> a dlthings:Thing ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "Journal of Open Source Software" ] .
|
||
|
||
<https://www.scicrunch.org/resolver/SCR_003931> a dlthings:Thing .
|
||
|
||
|
||
|
||
exthisns:measurement853 a dlthings:ValueSpecification ;
|
||
rdfs:range xsd:decimal ;
|
||
rdfs:value "145.3" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "measured mass (kg)" ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object obo:PATO_0000125 ;
|
||
rdf:predicate ex:subject ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object obo:UO_0000009 ;
|
||
rdf:predicate obo:UO_0000000 ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object obo:IAO_0000109 ;
|
||
rdf:predicate ex:subject ] .
|
||
|
||
|
||
|
||
exthisns:measurement853 a dlthings:ValueSpecification ;
|
||
rdfs:range xsd:decimal ;
|
||
rdfs:value "145.3" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "measured mass (kg)" ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object obo:PATO_0000125 ;
|
||
rdf:predicate ex:subject ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object obo:UO_0000009 ;
|
||
rdf:predicate obo:UO_0000000 ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object obo:IAO_0000109 ;
|
||
rdf:predicate ex:subject ] .
|
||
|
||
|
||
|
||
ex:modified a dlthings:Property ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "modified" ] ;
|
||
dlthings:description "Date on which the resource was changed." .
|
||
|
||
|
||
|
||
ex:modified a dlthings:Property ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "modified" ] ;
|
||
dlthings:description "Date on which the resource was changed." .
|
||
|
||
|
||
|
||
<https://ror.org/02nv7yv05> a dlthings:Thing ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:identifier ;
|
||
skos:exactMatch "ADMS:Identifier"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schemaAgency ;
|
||
rdfs:value "https://d-nb.info" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate skos:notation ;
|
||
rdfs:value "5008462-8" ] ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:identifier ;
|
||
rdfs:value "02nv7yv05" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schemaAgency ;
|
||
rdfs:range "uri"^^xsd:anyURI ;
|
||
rdfs:value "https://ror.org" ] ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object "https://www.wikidata.org/wiki/Q697111"^^xsd:anyURI ;
|
||
rdf:predicate owl:sameAs ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object "https://en.wikipedia.org/wiki/Forschungszentrum_J%C3%BClich"^^xsd:anyURI ;
|
||
rdf:predicate owl:sameAs ] .
|
||
|
||
|
||
|
||
exthisns:measurement853 a dlthings:ValueSpecification ;
|
||
rdfs:value "special" .
|
||
|
||
|
||
|
||
exthisns:measurement853 a dlthings:ValueSpecification ;
|
||
rdfs:value "special" .
|
||
|
||
|
||
|
||
[] a dlthings:Statement ;
|
||
rdf:object <https://helmholtz.de> ;
|
||
rdf:predicate ex:subject .
|
||
|
||
|
||
|
||
[] a dlthings:Statement ;
|
||
rdf:object <https://helmholtz.de> ;
|
||
rdf:predicate ex:subject .
|
||
|
||
|
||
|
||
<https://doi.org/10.1038/s41597-022-01163-2> a dlthings:Thing ;
|
||
skos:exactMatch "bibo:AcademicArticle"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate bibo:number ;
|
||
rdfs:value "80" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "Document number" ] ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate bibo:doi ;
|
||
rdfs:value "https://doi.org/10.1038/s41597-022-01163-2" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "DOI" ] ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:identifier ;
|
||
skos:exactMatch "ADMS:Identifier"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schemaAgency ;
|
||
rdfs:value "https://doi.org" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate skos:notation ;
|
||
rdfs:value "10.1038/s41597-022-01163-2" ] ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:modified ;
|
||
rdfs:range "xsd:date"^^xsd:anyURI ;
|
||
rdfs:value "2022-02-11" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate bibo:volume ;
|
||
rdfs:value "9" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "Volume" ] ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:date ;
|
||
rdfs:range "xsd:date"^^xsd:anyURI ;
|
||
rdfs:value "2022-03-11" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:bibliographicCitation ;
|
||
rdfs:value "Wagner, A.S., Waite, L.K., Wierzba, M. et al. FAIRly big: A framework for computationally reproducible processing of large-scale data. Sci Data 9, 80 (2022)." ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "FAIRly big: A framework for computationally reproducible processing of large-scale data" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:description ;
|
||
rdfs:value "Large-scale datasets present unique opportunities to perform scientific investigations with unprecedented breadth. However, they also pose considerable challenges for the findability, accessibility, interoperability, and reusability (FAIR) of research outcomes due to infrastructure limitations, data usage constraints, or software license restrictions. Here we introduce a DataLad-based, domain-agnostic framework suitable for reproducible data processing in compliance with open science mandates. The framework attempts to minimize platform idiosyncrasies and performance-related complexities. It affords the capture of machine-actionable computational provenance records that can be used to retrace and verify the origins of research outcomes, as well as be re-executed independent of the original computing infrastructure. We demonstrate the framework’s performance using two showcases: one highlighting data sharing and transparency (using the studyforrest.org dataset) and another highlighting scalability (using the largest public brain imaging dataset available: the UK Biobank dataset)." ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate bibo:numPages ;
|
||
rdfs:range "xsd:nonNegativeInteger"^^xsd:anyURI ;
|
||
rdfs:value "17" ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "Number of pages" ] ] ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object "https://www.nature.com/subjects/software"^^xsd:anyURI ;
|
||
rdf:predicate ex:subject ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object "https://www.nature.com/subjects/data-publication-and-archiving"^^xsd:anyURI ;
|
||
rdf:predicate ex:subject ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object "https://portal.issn.org/resource/issn/2052-4463"^^xsd:anyURI ;
|
||
rdf:predicate ex:isPartOf ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object "https://www.nature.com/subjects/data-processing"^^xsd:anyURI ;
|
||
rdf:predicate ex:subject ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object "https://spdx.org/licenses/CC-BY-4.0"^^xsd:anyURI ;
|
||
rdf:predicate ex:license ],
|
||
[ a dlthings:Statement ;
|
||
rdf:object "https://www.nature.com/articles/s41597-022-01163-2"^^xsd:anyURI ;
|
||
rdf:predicate owl:sameAs ] ;
|
||
dlthings:relation <https://portal.issn.org/resource/issn/2052-4463> .
|
||
|
||
<https://portal.issn.org/resource/issn/2052-4463> a dlthings:Thing ;
|
||
skos:exactMatch "bibo:Journal"^^xsd:anyURI ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "Scientific Data" ] .
|
||
|
||
|
||
|
||
[] a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:identifier ;
|
||
skos:exactMatch ADMS:Identifier ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schemaAgency ;
|
||
rdfs:value "https://d-nb.info" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate skos:notation ;
|
||
rdfs:value "5008462-8" ] .
|
||
|
||
|
||
|
||
[] a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:identifier ;
|
||
skos:exactMatch ADMS:Identifier ;
|
||
dlthings:attributes [ a dlthings:AttributeSpecification ;
|
||
rdf:predicate ADMS:schemaAgency ;
|
||
rdfs:value "https://d-nb.info" ],
|
||
[ a dlthings:AttributeSpecification ;
|
||
rdf:predicate skos:notation ;
|
||
rdfs:value "5008462-8" ] .
|
||
|
||
|
||
|
||
ex:title a dlthings:Property .
|
||
|
||
|
||
|
||
ex:title a dlthings:Property .
|
||
|
||
|
||
|
||
[] a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "My attribute" .
|
||
|
||
|
||
|
||
[] a dlthings:AttributeSpecification ;
|
||
rdf:predicate ex:title ;
|
||
rdfs:value "My attribute" .
|
||
|
||
|
||
|
||
<https://doi.org/10.21105/joss.03262> a dlthings:Thing ;
|
||
dlthings:characterized_by [ a dlthings:Statement ;
|
||
rdf:object "https://www.scicrunch.org/resolver/SCR_003931"^^xsd:anyURI ;
|
||
rdf:predicate ex:subject ] .
|
||
|
||
|
||
|
||
exthisns:mything a dlthings:Thing .
|
||
|
||
|
||
|
||
exthisns:mything a dlthings:Thing .
|
||
|
||
|
||
|
||
<http://dbpedia.org/resource/Madrid> a dlspatial:Location .
|
||
|
||
|