keep Contributing guide in synch with datalad-concept #93
1 changed files with 25 additions and 3 deletions
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@ -25,8 +25,8 @@ hatch shell
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Presently, this work require a patched linkml installation.
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The patch(es) are listed in `patches/`.
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The script `tools/patch_linkml` documents how they need to be applied.
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This script can be used to patch a local installation, and is also executed in the actions that validate the included data models.
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In order to apply the patch, run
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``hatch`` automatically applies the patch post installation, and as long as you're using a hatch environment or hatch based check/script, there is nothing you need to do.
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However, if you need to do it outside of `hatch`, run the following command to patch manually:
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```
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bash tools/patch_linkml
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@ -65,6 +65,20 @@ hatch shell
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make checkmodel/flat-data/unreleased
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```
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### Switching import locations
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Although most rules will perform this action automatically, the following command allows to switch from a remote-URL import to an import from a local file (which is relevant when, for example, there is no remote URL yet to import from, or you are testing local changes):
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```
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make imports-local
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```
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Its opposite command, reverting imports back to remote URLs, is
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```
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make imports-remote
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```
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### Example conversion
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Each schema has example data used for testing.
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@ -108,5 +122,13 @@ linkml convert -o ds.ttl -s src/flat-data/unreleased.yaml --target-class-from-pa
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## Useful hints for a contribution workflow
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* Patches get regularly updated, and they are not re-applied automatically in an existing hatch environments. If in doubt, wipe the environment and re-create it, for example using ``hatch env prune``.
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* Because LinkML allows imports from other schemas, there may be more to the classes or slots you see defined in any given file.
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In order to figure out easily which slots are available or even required, we recommend that you **render the documentation locally**, as this allows you to browse through the classes and discover also information that comes from other schemas.
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* A broad swipe of checks for any new or existing component can be achieved with the following command composition (where one replaces ``component`` with the schema name):
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```
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export component=flat-data; make checkmodel/$component/unreleased convertexamples/$component/unreleased checkvalidation/$component/unreleased
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```
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