datalad/fairly-big-processing-workflow
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Fixed datalad create commands #7

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jernsting merged 1 commit from main into main 2024-08-19 06:23:38 +00:00
Conversation 1 Commits 1 Files changed 2 +4 -4
2 changed files with 4 additions and 4 deletions
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4
bootstrap_forrest_fmriprep.sh
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@ -79,9 +79,9 @@ datalad save -m "Add Freesurfer license file"
# create dedicated input and output locations. Results will be pushed into the
# output sibling and the analysis will start with a clone from the input sibling.
datalad create-sibling-ria -s output "${output_store}"
datalad create-sibling-ria --new-store-ok -s output "${output_store}"
pushremote=$(git remote get-url --push output)
datalad create-sibling-ria -s input --storage-sibling off "${input_store}"
datalad create-sibling-ria --new-store-ok -s input --storage-sibling off "${input_store}"
# register the input dataset
datalad clone -d . ${data} inputs/data

4
bootstrap_ukb_cat.sh
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@ -79,9 +79,9 @@ git commit --no-edit --amend --author "Felix Hoffstaedter <f.hoffstaedter@fz-jue
# create dedicated input and output locations. Results will be pushed into the
# output sibling and the analysis will start with a clone from the input sibling.
datalad create-sibling-ria -s output "${output_store}"
datalad create-sibling-ria --new-store-ok -s output "${output_store}"
pushremote=$(git remote get-url --push output)
datalad create-sibling-ria -s input --storage-sibling off "${input_store}"
datalad create-sibling-ria --new-store-ok -s input --storage-sibling off "${input_store}"
# register the input dataset
datalad clone -d . ${data} inputs/data