47 lines
2.5 KiB
Text
47 lines
2.5 KiB
Text
$ datalad rerun
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[INFO] run commit 1223bc4; (run brain extract...)
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[INFO] Making sure inputs are available (this may take some time)
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[INFO] Cloning dataset to Dataset(/home/me/usecases/repro/demo/inputs/ds000001)
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[INFO] Attempting to clone from https://datasets.datalad.org/openfmri/ds000001 to /home/me/usecases/repro/demo/inputs/ds000001
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[INFO] Attempting to clone from https://datasets.datalad.org/openfmri/ds000001/.git to /home/me/usecases/repro/demo/inputs/ds000001
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[INFO] Start enumerating objects
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[INFO] Start counting objects
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[INFO] Start compressing objects
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[INFO] Start receiving objects
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[INFO] Start resolving deltas
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[INFO] Completed clone attempts for Dataset(/home/me/usecases/repro/demo/inputs/ds000001)
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install(ok): inputs/ds000001 (dataset) [Installed subdataset in order to get /home/me/usecases/repro/demo/inputs/ds000001]
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[INFO] Cloning dataset to Dataset(/home/me/usecases/repro/demo/inputs/ds000002)
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[INFO] Attempting to clone from https://datasets.datalad.org/openfmri/ds000002 to /home/me/usecases/repro/demo/inputs/ds000002
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[INFO] Attempting to clone from https://datasets.datalad.org/openfmri/ds000002/.git to /home/me/usecases/repro/demo/inputs/ds000002
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[INFO] Start enumerating objects
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[INFO] Start counting objects
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[INFO] Start compressing objects
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[INFO] Start receiving objects
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[INFO] Start resolving deltas
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[INFO] Completed clone attempts for Dataset(/home/me/usecases/repro/demo/inputs/ds000002)
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install(ok): inputs/ds000002 (dataset) [Installed subdataset in order to get /home/me/usecases/repro/demo/inputs/ds000002]
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get(ok): inputs/ds000001/sub-01/anat/sub-01_T1w.nii.gz (file) [from web...]
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get(ok): inputs/ds000002/sub-01/anat/sub-01_T1w.nii.gz (file) [from web...]
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unlock(ok): sub-001/anat.nii.gz (file)
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unlock(ok): sub-001/anat_mask.nii.gz (file)
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unlock(ok): sub-002/anat.nii.gz (file)
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unlock(ok): sub-002/anat_mask.nii.gz (file)
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[INFO] == Command start (output follows) =====
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action summary:
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get (notneeded: 4)
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Processing inputs/ds000001/sub-01/anat/sub-01_T1w.nii.gz
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Processing inputs/ds000002/sub-01/anat/sub-01_T1w.nii.gz
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[INFO] == Command exit (modification check follows) =====
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run(ok): /home/me/usecases/repro/demo (dataset) [bash -e code/brain_extraction.sh inputs/...]
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add(ok): sub-001/anat.nii.gz (file)
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add(ok): sub-001/anat_mask.nii.gz (file)
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add(ok): sub-002/anat.nii.gz (file)
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add(ok): sub-002/anat_mask.nii.gz (file)
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action summary:
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add (ok: 4)
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get (notneeded: 2, ok: 2)
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install (ok: 2)
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run (ok: 1)
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save (notneeded: 3)
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unlock (ok: 4)
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