19 lines
949 B
Text
19 lines
949 B
Text
$ datalad run -m "run brain extract workflow" \
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--input "inputs/ds*/sub-01/anat/sub-01_T1w.nii.gz" \
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--output "sub-*/anat" \
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bash -e code/brain_extraction.sh inputs/ds*/sub-01/anat/sub-01_T1w.nii.gz
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[INFO] Making sure inputs are available (this may take some time)
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get(ok): inputs/ds000001/sub-01/anat/sub-01_T1w.nii.gz (file) [from web...]
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get(ok): inputs/ds000002/sub-01/anat/sub-01_T1w.nii.gz (file) [from web...]
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[INFO] == Command start (output follows) =====
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action summary:
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get (notneeded: 4)
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Processing inputs/ds000001/sub-01/anat/sub-01_T1w.nii.gz
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Processing inputs/ds000002/sub-01/anat/sub-01_T1w.nii.gz
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[INFO] == Command exit (modification check follows) =====
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run(ok): /home/me/usecases/repro/demo (dataset) [bash -e code/brain_extraction.sh inputs/...]
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add(ok): sub-001/anat.nii.gz (file)
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add(ok): sub-001/anat_mask.nii.gz (file)
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add(ok): sub-002/anat.nii.gz (file)
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add(ok): sub-002/anat_mask.nii.gz (file)
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save(ok): . (dataset)
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