229 lines
6.9 KiB
HTML
229 lines
6.9 KiB
HTML
<!doctype html>
|
|
<html>
|
|
<head>
|
|
<meta charset="utf-8">
|
|
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no">
|
|
|
|
<!-- Edit me start! -->
|
|
<title>This is where your title goes</title>
|
|
<meta name="description" content=" This is where you put a short description ">
|
|
<meta name="author" content=" Your Name ">
|
|
<!-- Edit me end! -->
|
|
|
|
<link rel="stylesheet" href="../reveal.js/dist/reset.css">
|
|
<link rel="stylesheet" href="../reveal.js/dist/reveal.css">
|
|
<link rel="stylesheet" href="../reveal.js/dist/theme/beige.css">
|
|
|
|
<!-- Theme used for syntax highlighted code -->
|
|
<link rel="stylesheet" href="../reveal.js/plugin/highlight/monokai.css">
|
|
</head>
|
|
<body>
|
|
<div class="reveal">
|
|
<div class="slides">
|
|
|
|
<div class="reveal">
|
|
<div class="slides">
|
|
<section>
|
|
<h1>a reproducible paper</h1>
|
|
<table>
|
|
<tr>
|
|
<td>Adina Wagner</td>
|
|
</tr>
|
|
<tr>
|
|
<td>
|
|
<small>Psychoinformatics lab, Jülich Research Center<br>
|
|
</small>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
</section>
|
|
|
|
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## A reproducible paper?
|
|
*Reproducible*, as defined first by Claebout & Karrenbach (1992):
|
|
<!-- .element: class="fragment fade-in" align="left" data-fragment-index="1" -->
|
|
|
|
> Authors provide all the necessary **data** and the **computer codes**
|
|
to run the analysis again, re-creating the results.
|
|
<!-- .element: class="fragment fade-in" align="left" data-fragment-index="1" -->
|
|
|
|
My talk is a demonstration of
|
|
<a href=https://github.com/psychoinformatics-de/paper-remodnav
|
|
target="_blank">https://github.com/psychoinformatics-de/paper-remodnav</a>, a reproducible paper,
|
|
and its advantages.
|
|
<!-- .element: class="fragment fade-in" align="left" data-fragment-index="2" -->
|
|
</script></section>
|
|
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## What are the advantages?
|
|
|
|
<!-- .element: width="250" -->
|
|
|
|
<imgcredit>benefit by alvianwijaya from the Noun Project</imgcredit>
|
|
|
|
<aside class="notes">
|
|
Anything inside this tag is put into the speaker notes.
|
|
</aside>
|
|
</script>
|
|
</section>
|
|
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## Increasing trust in results and paper
|
|
|
|
<!-- .element: width="250" -->
|
|
|
|
<imgcredit>trusted by H Alberto Gongora from the Noun Project</imgcredit>
|
|
|
|
<aside class="notes">
|
|
- anecdote on hand-copy-paste
|
|
</aside>
|
|
</script>
|
|
</section>
|
|
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## A more convincing case with my research
|
|
|
|
<!-- .element: width="250" -->
|
|
|
|
<imgcredit>Data by Yamini Ahluwalia from the Noun Project</imgcredit>
|
|
|
|
<aside class="notes">
|
|
- maybe screenshot of reviewer rebuttal?
|
|
</aside>
|
|
</script>
|
|
</section>
|
|
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## Easy collaboration
|
|
|
|
<!-- .element: width="250" -->
|
|
|
|
<imgcredit>collaboration by Creative Stall from the Noun Project</imgcredit>
|
|
|
|
<aside class="notes">
|
|
- show a Git log here
|
|
</aside>
|
|
</script>
|
|
</section>
|
|
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## Saving time
|
|
|
|
<!-- .element: width="250" -->
|
|
|
|
<imgcredit>counterclockwise by Sara Jeffries from the Noun Project</imgcredit>
|
|
|
|
<aside class="notes">
|
|
- demonstrate the anekdote about a parameter change and data update
|
|
</aside>
|
|
</script>
|
|
</section>
|
|
|
|
|
|
<section>
|
|
<h2>"How can I find out more?"</h2>
|
|
|
|
|
|
<a href="http://handbook.datalad.org/en/latest/" target="_blank"><img data-src="../pics/logo.svg"></a>
|
|
<div>
|
|
<a href="http://handbook.datalad.org" target="_blank">handbook.datalad.org</a>
|
|
</div>
|
|
</section>
|
|
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## The DataLad handbook
|
|
|
|
- Written by Laura, Michael, and me
|
|
- Starts with all the basic building blocks for using and mastering DataLad,
|
|
and covers domain-specific use-cases in the later parts - for example a
|
|
detailed set of instructions for a <a href="http://handbook.datalad.org/en/latest/usecases/reproducible-paper.html" target="_blank">reproducible paper</a>.</li>
|
|
- It lives and grows on Github: <a href="https://github.com/datalad-handbook/book" target="_blank">https://github.com/datalad-handbook/book</a>
|
|
- It is work-in-progress, and **your contributions are welcome**!
|
|
|
|
</script></section>
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## Your contributions are welcome!
|
|
|
|
- **Bug reports** or **feature requests**: Something does not work?
|
|
Some content is yet missing? Please tell us by opening an **issue**.
|
|
|
|
|
|
|
|
</script></section>
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## Your contributions are welcome!
|
|
|
|
- **Typo fixes**, or any other **content** contributions: Do a **pull request**, and
|
|
become a contributor! From fixed typos you found to full sections or use-cases.
|
|
|
|
|
|
|
|
- Hint: Do it for this year's <a href="https://hacktoberfest.digitalocean.com/" target="_blank"> Hacktoberfest</a> and get a geeky T-Shirt ;-)
|
|
</script></section>
|
|
|
|
<section data-markdown><script type="text/template">
|
|
## The near future
|
|
|
|
- DataLad is already installed on the cluster (<tt>brainbfast</tt> for now)
|
|
- There will be opt-in DataLad teaching: Bi-weekly support sessions on Thu
|
|
afternoons for exchange, demonstrations, and trouble-shooting starting in October
|
|
- The book is the basis, and a standalone resource for everyone to read and learn with
|
|
- General DataLad questions should be posted to <a href="http://neurostars.org" target="_blank">neurostars.org</a>,
|
|
there will be a dedicated place to collect information for INM7-specifics
|
|
|
|
</script></section>
|
|
|
|
<section data-markdown>
|
|
# Questions?
|
|
</section>
|
|
|
|
|
|
</div>
|
|
</div>
|
|
|
|
<script src="../reveal.js/dist/reveal.js"></script>
|
|
<script src="../reveal.js/plugin/notes/notes.js"></script>
|
|
<script src="../reveal.js/plugin/markdown/markdown.js"></script>
|
|
<script src="../reveal.js/plugin/highlight/highlight.js"></script>
|
|
<script>
|
|
// More info about initialization & config:
|
|
// - https://revealjs.com/initialization/
|
|
// - https://revealjs.com/config/
|
|
Reveal.initialize({
|
|
hash: true,
|
|
// The "normal" size of the presentation, aspect ratio will be preserved
|
|
// when the presentation is scaled to fit different resolutions. Can be
|
|
// specified using percentage units.
|
|
width: 1280,
|
|
height: 960,
|
|
// Factor of the display size that should remain empty around the content
|
|
margin: 0.3,
|
|
// Bounds for smallest/largest possible scale to apply to content
|
|
minScale: 0.2,
|
|
maxScale: 1.0,
|
|
|
|
controls: true,
|
|
progress: true,
|
|
history: true,
|
|
center: true,
|
|
slideNumber: 'c',
|
|
pdfSeparateFragments: false,
|
|
pdfMaxPagesPerSlide: 1,
|
|
pdfPageHeightOffset: -1,
|
|
transition: 'slide', // none/fade/slide/convex/concave/zoom
|
|
// Learn about plugins: https://revealjs.com/plugins/
|
|
plugins: [ RevealMarkdown, RevealHighlight, RevealNotes ]
|
|
});
|
|
</script>
|
|
</body>
|
|
</html>
|